Online
14 - 17 June 2022
13:00 - 17:00
Instructors: Elvina Gountouna
Helpers: Lucie Woellenstein, Ines Böhm
FAIR in (Biological) Practice
Open Science is disruptive. It will change how we do reasearch and how society benefits from it. Making data re-usable is key to this, and FAIR principles are a way to achieve it.
We will teach you how planning and using the correct set of tools you can make your outputs ready for public sharing and reuse.
This hands-on 4 half-day sessions workshop covers the basics of Open Science and FAIR practices, and looks at how to use these ideas in your own projects. The workshop is a mix of lectures and hands-on lessons where you will use the approaches learned and implement some of the discussed practices.
The course is aimed at active researchers in biomedicine science (PhD students, postdocs, technicians, young PIs etc.) who are interested in Open Science, FAIR (Findable, Accessible, Interoperable and Reusable) principles and efficient data management. This training is aimed at those who want to be familiar with these concepts and apply them throughout their project’s life cycle. The course is covered in four half days.
Ed-DaSH
Ed-DaSH is a Data Science training programme for Health and Biosciences. The team has developed workshops using The Carpentries platform on the following topics. See workshops for dates and registration details. All workshops will be delivered remotely.
Registration: Online
The course is free but there is a 50 pounds holding deposit refunded after attending the workshop.
Where: This training will take place online. The instructors will provide you with the information you will need to connect to this meeting.
When: 14 - 17 June 2022. Add to your Google Calendar.
Requirements:
Participants must have access to a computer with a
Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.).
Paticipaints must create accounts in Protocols.io and Benchling,
Accessibility: We are dedicated to providing a positive and accessible learning environment for all. Please notify the instructors in advance of the workshop if you require any accommodations or if there is anything we can do to make this workshop more accessible to you.
Contact: Please email bio_rdm@ed.ac.uk for more information.
Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.
Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.
We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code.
Please be sure to complete the workshop survey (can be completed before you attend).
The lesson taught in this workshop is being piloted and a precise schedule is yet to be established.
| Pre-workshop Setup | |
| Lessons | |
| FAIR in (Biological) Practice | Introduction to Open Science |
| Being FAIR | |
| IP and Opennes | |
| Introduction to metadata | |
| Break | |
| Afternoon | Between episodes |
| Lessons | |
| FAIR in (Biological) Practice | Being precise |
| (Meta)data in Excel | |
| Laboratory records | |
| Working with files | |
| Break | |
| Afternoon | Between episodes |
| Lessons | |
| FAIR in (Biological) Practice | Re-usable computing |
| Version control | |
| Templates for consistency | |
| Break | |
| Afternoon | Between episodes |
| Lessons | |
| FAIR in (Biological) Practice | Public repositories |
| It's all about planning | |
| Putting it all together | |
| Break | |
| Afternoon | Between episodes |
To participate in a workshop, you will need access to software as described below. In addition, you will need an up-to-date web browser.
We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.
If you haven't used Zoom before, go to the official website to download and install the Zoom client for your computer.
Like other Carpentries workshops, you will be learning by "coding along" with the Instructors. To do this, you will need to have both the window for the tool you will be learning about (a terminal, RStudio, your web browser, etc..) and the window for the Zoom video conference client open. In order to see both at once, we recommend using one of the following set up options: