Overview
Nextflow is a workflow management system, similar to Snakemake but written in Groovy.
nf-core is community-led repository of high quality bioinformatics workflows using Nextflow.
This Nextflow course is based on https://seqera.io/training/.
nf-core content of lesson: https://nf-co.re/usage/tutorials/nf_core_tutorial.
Same dataset as the Ed-DaSH Snakemake lesson.
The lesson is designed to be covered over two days.
Schedule
Day 1
- Getting Started with Nextflow
- Channels
- Processes
- Operators
- Nextflow scripting
Day 2
- RNA-Seq pipeline
- Nextflow Configuration
- DSL2, new update to language
- Introduction to nf-core